@mulveling I did put the stock tubes back in the 5SE, a matched quad of Electro-Harmonix 6H30's plus one in the rectifier position along with a Tung-Sol 6550. That did fix my problem (so far fingers crossed) with the 5SE triggering the Fault Protection mode on the PS Audio BHK 300s. So that was great advice.
However, my system sounded flat and less dynamic after that change. I thought the tubes simply might need more burn in but a couple of weeks later I just wasn't happy with the sound. I put a new set of 6N6P tubes and like magic the sound I wanted and love was back. I've now stockpiled 4 sets of 6N6P tubes and will plan on swapping them out around $1600 hours. They are cheap enough that is no big deal.
I've never read about switching in a KT88 or KT90 instead of the 6550. Does it make a sonic difference? I have an Allnic H3000 phono stage and rolling the rectifier tube makes a pretty big difference in the H300.