The problem was still the same channel after swapping tubes. I just now cleaned the sockets with the contact cleaner. The amp is warming up now and as I'm typing this, it's crackling on the same channel. So the cleaner did not work.
Using contact cleaner in tube sockets
My ARC VT100mkii which I just got, has a crackling from one of the channels. The tubes are new. When I first installed the tubes, it was fine. The following morning, I powered it on, and the crackling started. I swapped tubes with the other side and it was fine for a while. This evening, it started again. Will using contact cleaner damage the sockets? It is quick drying cleaner.