If I were you, I'd start from square 1....make sure the cartridge suspension and stylus is ok. I'd send it back to Lyra for a checkup. They probably won'r even charge you to look at it. The Atlas is one of my favorite cartridges....I've heard it in V with a high end system with powerful low end and no woofer pumping.
Why are my woofers pumping?
The other day, with sunlight direct from the side, I noticed that the
woofers in my speakers are pumping in and out, much more than I was aware of,
when the stylus is in the groove, even between tracks (no music). I can see it, even if I don’t hear it. Why
does it happen? The woofers behave normally (no pumping) with digital music, and
when the stylus it lifted from the groove, so it is not the speakers, amps,
preamp or phono stage.
I’ve read that the typical reason for woofer pumping is that the cartridge / arm resonance is too low. I tested, with my Hifi News test record, and yes, the lateral test puts the resonance at 7 hz or so – too low (but I’ve seen some doubts about the results from that test record). It is strange, since the combo I use – Lyra Atlas cartridge and SME V arm (on a Hanss T-30 player) is supposed to work well. I tried to strip my arm of extras, cleaned the damping trough, etc – but it did not help much.
Anyone has an idea, why it happens, or what to do about it?