Your thought process of wanting to get the processor to the top is a good one in theory though as it will have to most cables coming in and out it increases the chance for power and signal cables crossing. Though a royal pain in the ass the only way to likely to get the problem under control will be to remove all of the cables and start over again grouping the two types into two groupings and using something to keep them somewhat bundled so they don't stray. I just it myself in two racks and it was a process.