You have another problem other than the file format. Roon should have no problem with WAV files, I use them all the time. Is hard drive space a problem? WAV does take up some HD space. I would contact the Roon service folks and discuss the problem with them, they have always been the most helpful.
BTW, although FLAC is a lossless format, when playing the server has to decompress that file on the fly, so there is small, or perhaps very small chance, that the server will goof and you get a bit error. I believe this is why some folks believe FLAC doesn't sound as good as WAV, even though after decompression, the two files are identical. For this reason, plus the fact HD space is so dirt cheap, I store everything in WAV format.
BTW, although FLAC is a lossless format, when playing the server has to decompress that file on the fly, so there is small, or perhaps very small chance, that the server will goof and you get a bit error. I believe this is why some folks believe FLAC doesn't sound as good as WAV, even though after decompression, the two files are identical. For this reason, plus the fact HD space is so dirt cheap, I store everything in WAV format.