I myself have been Wed to Tube Amplification for nearly 30 Years.
I don't delve into the Circuitry as all Items in use are Bespoke Built, so I leave this to the EE's whom I have trusted.
I have done and do Tube Roll, I am supported with my Valve Purchasing and have a Testing Service at Hand, all my chosen Valves as a result of Tube Rolling are Matched and Optimal in the Test Measurements, some pairs are even above Manufacturers Spec'.
Certain Tubes are now discovered for their ideal placement in the circuitry and there are a few tubes, I would very much like to play with as a Journey of discovery but have not, as Tube Rolling will be quite some expense.
During Tube Rolling, I have had in the Line Up, Vintage, NOS and Modern Versions.
My finding with Certain Tubes is that there has been a initial impact that has been quite attractive and certainly a comparative attraction to another Tube that made a good impression.
I have used Tubes that have initially impressed, and have improved as the Tube has a extension of use. This good impression has been followed by a need to remove the Tube with immediacy, there has been a change to the sonic after a certain period of being heated that has caused a detrimental effect to the SQ. In a few cases to the point, it was a very concerning sound being produced, filled with unwanted distortion.
I can't help narrow down your own Trouble Shooting requirements, as there is not too much info' on offer to explain how the approach to fault finding has been undertaken.
My experiences has led me to Swapping Tubes across Channels, it is one of a few commonly seen methods.
In your case, with Two Systems, swapping Tubes across systems might also be an option to see if the unwanted condition manifests with Tubes that are satisfying in another device.
On the plus side you are fortunate not to be dependent on one system only, music can be replayed at your leisure and time is available to tinker around with the Second System.