Help me put a system together for under $1k.

Um, Dad? Don't be a dinosaur. An iPod or equivalent will almost certainly be his primary source--if for no other reason than that downloads are probably the best way for a kid "to discover different types of music." As for the turntable, a decent one will chew up a third of your budget, and really constrain speaker choice as a result. Does he even own any LPs? Has he any real interest in spending his weekends scrounging the used bins? (He's unlikely to be shelling out premium dollars for new vinyl anytime soon.) Does he listen to the radio? If so, you should be thinking receiver, not integrated, despite the audiophile preference for the latter.

In short, I think you're asking the wrong people about this. You should be asking him what he wants, what he's interested in, what his goals are (as if he had any, right?).

And whatever you do, don't pick out his speakers for him. It's his ears, not yours, that matter.

Again, I am looking for a smooth sounding system without bloated bass, harsh highs or very prominent or "forward" midrange.

Keep in mind that it's your choice of speakers, more than anything else, that will govern this. You can buy awfully cheap electronics today that entail relatively little sonic compromise, so budget according. As for speakers, to each his own, but be sure to include in your comparisons one or more of the following brands: Energy, Paradigm, PSB, Infinity, JBL. These are all companies with a very particular approach to good sound (and some solid research behind it) that makes a good standard against which to judge the rest of the market, especially in the budget category.

I'll second the Technics turntable recommendation above. It's not high-end by any means (and definitely upgrade the cartridge), but it's a p-mount unit, which means it'll be easy to set up (good for a kid), and it won't trash his LPs--so he'll still have them to listen to when and if he decides to upgrade.

Finally, as the guy who started the "ask your son" trope, let me say that it wasn't my intention to give you a hard time. It's just that we regularly see posts about what to buy/recommend for a "friend," which turns out to be an exercise in foisting one's own hobby/priorities on somebody else. I meant to warn you away from that, though your follow-up post suggests you weren't falling into that trap. My apologies for any suggestion otherwise.