This is the weirdest problem, but luckily it's been fixed.
I emailed Genesis, and they said it might be the active servo cable which they can replace for $2000USD. I asked around, and most people seem to think there may be a DC offset coming out of my AVR which is confusing the active servo system. So I checked the cables, and they looked fine. Then I got another pre amp and magically the problem went away. It works perfectly. Now here's the weird part. I plugged it back into my AVR and this time, everything is working fine! I have no idea what happened in the 2 days or so they have been sitting there, but I'm listening to them right now, and they are working perfectly and sound fantastic. Very odd.