For now, do nothing. You need to get accustomed to the new sound. A lot of the break-in process, I suspect, is the listener breaking in, not the gear. Also, try not to move the new cables at all; let them rest in their current position so that static charges in the insulation stabilize and become evenly distributed. After that, you might need to tune the system if it still doesn't please you. Any new addition is not something that you can drop in in place of something else; you have to make adjustments.
The first adjustment would be speaker placement or listening chair placement because these are free changes. Sometimes it is a shockingly small movement of the speaker will do it. In particular, change the toe-in of the speaker to primarily alter the energy delivered by the tweeter. Moving the speaker may allow you to find a placement with more bass reinforcement--more bass means the relative balance has shifted downward so the perceived brightness is reduced.
I doubt that a quick and easy hardware solution, such as fuse swap will really do the trick if there has been a substantial change. Perhaps the best hardware solution might be to put back one of the interconnects, or the speaker wire, s that the entire system is not cabled with the Audioquest stuff.